LIST OF PUBLICATIONS

 

                       by  Edward N. Trifonov

                             (May 2003)

 

 

 

 

148. Trifonov, E. N., Berezovsky, I. N., Evolutionary aspects of protein structure and folding, Curr. Opinion Struct. Biol. 13, 110-114 (2003)

147. Trifonov, E. N., Kirzhner, A., Kirzhner, V.M., Berezovsky, I. N., An eye-opener to protein structure, ComPlexUs 1, 29-37 (2003)

 

2002

 

146. Berezovsky, I. N., Trifonov, E. N., Flowering buds of globular proteins: transpiring simplicity of protein organization, Comp Funct Genom 3, 525-534 (2002)

145. Makhoul, C. H., Trifonov, E. N., Distribution of rare triplets along mRNA and their relation to protein folding, J Biomolec Str Dyn 20, 413-420 (2002)

144. Berezovsky, I. N., Trifonov, E. N., Back to units of protein folding, J. Biomolec. Str. Dyn. 20, 315-316 (2002)

143. Trifonov, E. N., Berezovsky, I. N., Molecular evolution from abiotic scratch, FEBS Letters 527, 1-4 (2002)

142. Peleg, O., Brunak, S., Trifonov, E. N., Nevo, E., and Bolshoy, A., RNA secondary structure and sequence conservation in C1 region of human immunodeficiency virus type 1 env gene, AIDs Res. and Human Retroviruses 18, 867-878 (2002)

141. Berezovsky, I. N., Trifonov, E. N., Loop fold structure of proteins: Resolution of Levinthalís paradox, J. Biomolec. Str. Dyn. 20, 5-6 (2002)

140. Trifonov, E. N., Segmented genome: elementary units of genome  structure, Russian J. of Genetics 38, 659-663 (2002)

139. Kiyama, R., Trifonov, E. N., What positiones nucleosomes? - A model, FEBS Let. 523, 7-11 (2002)

138. Trifonov, E. N., Berezovsky, I. N., Proteomic code, Molecular Biology 36, 239-243 (2002)

137. Kolker, E., Tjaden, B. C., Hubley, R., Trifonov, E. N., Siegel, A. F., Spectral analysis of distributions: finding periodic components in eukaryotic enzyme length data, OMICS: A Journal of Integrative Biology 6, 123-130 (2002)

 

2001

 

136. Berezovsky, I. N., Trifonov, E. N., Protein structure and folding: a new start. J. Biomolec. Str. Dyn. 19, 397-403 (2001)

135. Berezovsky, I. N., Kirzhner, V. M., Kirzhner, A, Trifonov, E. N., Protein folding: looping from hydrophobic nuclei. Proteins: Structure, Function and Genetics 45, 346-350 (2001)

134. Bellgard, M., Schibeci, D., Trifonov, E. N., Gojobori, T., Early detection of G+C differences in bacterial species inferred from the comparative analysis of the two completely sequenced Helicobacter pylori strains. J. Mol. Evol. 53, 465-468 (2001)

133. Trifonov, E. N., Kirzhner, A., Kirzhner, V. M., Berezovsky, I. N., Distinct stages of protein evolution as suggested by protein sequence analysis. J. Mol. Evol. 53, 394-401 (2001)

132. Berezovsky, I. N., Trifonov, E. N., Loop fold nature of globular proteins. Protein Engineering 14, 403-407 (2001)

131. Berezovsky, I. N., Trifonov, E. N. Van der Waals locks: loop-n-lock structure of globular proteins. JMB 307, 1419-1426 (2001)

130. Berezovsky, I. N., Trifonov, E. N., Evolutionary aspects of protein structure and folding. Molecular Biology 35, 233-239 (English), 278-284 (Russian) (2001)

129. Razin, S. V., Ioudinkova, E. S., Trifonov, E. N., Scherrer, K., Non-clonability correlates with genomic instability: a case study of a unique DNA region. J. Mol. Biol. 307, 481-486 (2001)

128. Fajkus, J., Trifonov, E. N., Columnar packing of telomeric nucleosomes. Bioch. Bioph. Res. Com. 280, 961-963 (2001)

 

2000

 

127. Trifonov, E. N., Consensus temporal order of amino acids and evolution of the triplet code. Gene 261, 139-151 (2000)

126. Trifonov, E. N., Molecular evolution, over three billion years back. Biophysics 45, 551-553 (2000) [Biofizika 45, 565-568 (2000)]

125. Trifonov, E. N., Earliest pages of bioinformatics. Bioinformatics 16, 5-9 (2000)

124. Trifonov, E. N., Leap Into Life's Beginnings. Tracking the chronology of amino acids. Science Spectra 20, 62-71 (2000). www.gbhap.com/Science_Spectra/

123. Berezovsky, I. N., Grosberg, A. Y., Trifonov, E. N., Closed loops of nearly standard size: common basic element of protein structure. FEBS Letters 466, 283-286 (2000)

 

1966-1999

 

122. Trifonov, E. N., Glycine clock: Eubacteria first, Archaea next, Protoctista, Fungi, Planta and Animalia at last. Gene Therapy and Molecular Biology 4, 313-322 (1999). www.gtmb.org

121. Trifonov, E. N., Upstream. In: "Encyclopedia of Molecular Biology", T. E. Creighton, Ed., John Wiley & Sons, Inc., New York, 1999, p. 2726-2727

120. Trifonov, E. N., Tandem repeats. In: "Encyclopedia of Molecular Biology", T. E. Creighton, Ed., John Wiley & Sons, Inc., New York, 1999, p. 2513-2514

119. Trifonov, E. N., Sequence codes. In: "Encyclopedia of Molecular Biology", T. E. Creighton, Ed., John Wiley & Sons, Inc., New York, 1999, p. 2324-2326

118. Trifonov, E. N., Palindrome. In: "Encyclopedia of Molecular Biology", T. E. Creighton, Ed., John Wiley & Sons, Inc., New York, 1999, p. 1759-1760

117. Trifonov, E. N., Inverted repeats. In: "Encyclopedia of Molecular Biology", T. E. Creighton, Ed., John Wiley & Sons, Inc., New York, 1999, p. 1310

116. Trifonov, E. N., Downstream. In: "Encyclopedia of Molecular Biology", T. E. Creighton,  Ed., John Wiley & Sons, Inc., New York, 1999, p. 766-767

115. Trifonov, E. N., Direct repeats. In: "Encyclopedia of Molecular Biology", T. E. Creighton, Ed., John Wiley & Sons, Inc., New York, 1999, p. 683

114. Trifonov, E. N., Elucidating sequence codes: three codes for evolution Annals NY Acad. Sci. 870, 330-338 (1999). (Title of the volume: Molecular Strategies in Biological Evolution, Ed. L. Caporale).

113. Herzel, H., Weiss, O., Trifonov, E. N., 10-11 bp periodicities in complete genomes reflect protein structure and DNA folding. Bioinformatics 15, 187-193 (1999)

112. Trifonov, E. N., Glycine clock: Eubacteria first, Archaea next, Protoctista, Fungi, Planta and Animalia at last. Gene Therapy and Molecular Biology, Proceedings of the International Conference, Redwood City, April 1999, Gene Therapy Press, Palo Alto, pp. 275-279

111. Ozoline, O. N., Deev, A. A., Trifonov, E. N., DNA bendability - a novel feature in E. coli promoter recognition. J. Biomol. Str. Dyn. 16, 825-831 (1999)

110. Ioshikhes, I., Trifonov, E. N., Zhang, M. Q., Periodical distribution of transcription factor sites in promoter regions and connection with chromatin structure. Proc. Natl. Acad. Sci. USA 96, 2891-2895 (1999)

109. Wada-Kiyama, Y., Kuwabara, K., Sakuma, Y., Onishi, Y., Trifonov, E. N., Kiyama, R., Localization of curved DNA and its association with nucleosome phasing in the promoter region of the human estrogen receptor a gene. FEBS Letters 444, 117-124 (1999)

108. Trifonov, E. N., Denisov, D. A., Makhoul, C., Interacting sequence patterns. Math. Modelling and Sci. Computing 9, 24-29 (1998)

107. Herzel, H., Weiss, O., Trifonov, E. N., Sequence periodicity in complete genomes of Archaea suggests positive supercoiling. J. Biomol. Str. Dyn. 16, 341-345 (1998)

106. Trifonov, E. N., How basics of protein evolution could help the gene finding Proccedings of the First International Conference on Bioinformatics of Genome Regulation and Structure BGRS'98, Novosibirsk - Altai Mountains, August 24-31, 1998, ICG, Novosibirsk, 1998, v.2. Bioinformatics of Genome Structure, pp. 266-268

105. Jurka, J., Klonowski, P., Trifonov, E. N., Mammalian retroposons integrate at sequence-dependent DNA kinks. J. Biomolec. Str. Dyn. 15, 717-721 (1998)

104. Trifonov, E. N., 3-, 10.5-, 200- and 400-base periodicities in genome sequences. Physica A 249, 511-516 (1998)

103. Herzel, H., Trifonov, E. N., Weiss, O., Grosse, I., Interpreting correlations in biosequences. Physica A 249, 449-459 (1998)

102. Denisov, D. A., Shpigelman, E. S., Trifonov, E. N., Protective nucleosome centering at splice sites as suggested by sequence-directed mapping of the nucleosomes. Gene 205, 145-149 (1997)

101. Trifonov, E. N., Bettecken, T., Sequence fossils, triplet expansion, and reconstruction of earliest codons. Gene 205, 1-6 (1997)

100. Trifonov, E. N., Genetic sequences as product of compression by inclusive superposition of many codes. Molecular Biology 31, 759-767 (1997)

99. Guimaraes, R. C., Trifonov, E. N., Lagunez-Otero, J., Taxonomy of 5S ribosomal RNA by the linguistic technique: probing with mitochondrial and mammalian sequences. J. Molec. Evol. 45, 271-277 (1997)

98. Bolshoy, A., Shapiro, K., Trifonov, E. N., Ioshikhes, I., Enhancement of the nucleosomal pattern in sequences of lower complexity. Nucl. Acids Res. 25, 3248-3254 (1997)

97. Trifonov, E. N., Segmented structure of mobile and separate DNA and RNA elements as suggested by their size distributions. J. Biomolec. Str. and Dynamics 14, 449-457 (1997)

96. Trifonov, E. N., Interfering contexts of regulatory sequence elements. CABIOS 12, 423-429 (1996)

95. Bolshoy, A., Ioshikhes, I., Trifonov, E. N., Applicability of the multiple alignment algorithm for detection of weak patterns: Periodically distributed DNA pattern as a study case. CABIOS 12, 383-389 (1996)

94. Ioshikhes, I., Bolshoy, A., Derenshteyn, K., Borodovsky, M., Trifonov, E. N., Nucleosome DNA sequence pattern revealed by multiple alignment of experimentally mapped sequences. J. Molec. Biol. 262, 129-139 (1996)

93. Kolker, E., Trifonov, E. N., Segments, folds and overall protein structure. In: "Biological Structure and Dynamics", (Eds. R. H. Sarma and M. H. Sarma), Adenine Press, New York, 1996, pp. 257-266

92. Popov, O., Segal, D. M., Trifonov, E. N., Linguistic complexity of protein sequences as compared to texts of human languages. BioSystems 38, 65-74 (1996)

91. Kolker, E., Trifonov, E. N., Sequence sizes of eukaryotic enzymes. In: "Pacific Symposium on Biocomputing'96", (Eds. L. Hunter and T. E. Klein), World Scientific, London, 1995, pp. 461-471

90. Trifonov, E. N., Hidden segmentation of protein sequences: structural connection with DNA. As below, pp. 473-479

89. Kolker, E., Trifonov, E. N., Sequence markers of segmented protein structure. In: "Modelling of biomolecular atructures and mechanisms", (Eds. A. Pullman, J. Jortner and B. Pullman), Kluwer Academic Publishers, Dordrecht, 1995, pp. 461-471

88. Trifonov, E. N., Segmented structure of protein sequences and early evolution of genome by combinatorial fusion of DNA elements. J. Molec. Evol. 40, 337-342 (1995)

87. Kolker, E., Trifonov, E. N., Periodic recurrence of methionines: Fossil of gene fusion? Proc. Natl. Acad. Sci. USA 92, 557-560 (1995)

86. Trifonov, E. N., On the recombinational origin of protein-sequence-subunit structure. J. Molec. Evol. 38, 543-546 (1994)

85. Berman, A. L., Kolker, E, Trifonov, E. N., Underlying order in protein sequence organization. Proc. Natl. Acad. Sci. USA 91, 4044-4047 (1994)

84. Trifonov, E. N., DNA as a language. In "The Second International Conference on Bioinformatics, Supercomputing and Complex Genome Analysis" (Eds. H. A. Lim, J. W. Fickett, C. R. Cantor and R. J. Robbins), World Scientific, Singapore, 1993, pp. 103-110

83. Ioshikhes, I., Trifonov, E. N., Nucleosomal DNA sequence database. Nucl. Acids Res. 21, 4857-4859 (1993)

82. Shpigelman, E. S., Trifonov, E. N., Bolshoy, A., CURVATURE: software for the analysis of curved DNA. CABIOS 9, 435-440 (1993)

81. Trifonov, E. N., Gene splicing: spatial separation of overlapping messages. Computers Chem. 17, 27-31 (1993)

80. Lagunez-Otero, J., Trifonov, E. N., mRNA periodical infrastructure complementary to the proof-reading site in the ribosome. J. Biomolec. Str. and Dynamics 10, 455-464 (1992)

79. Lagunez-Otero, J., Trifonov, E. N., Translation framing pattern in mRNA - compensation effects. In "Modelling and Computer Methods in Molecular Biology and Genetics", (Eds. V. A. Ratner and N. A. Kolchanov), Nova Science Publishers, New York, 1992, pp. 451-460.

78. Pietrokovski, S., Trifonov, E. N., Imported sequences in yeast mitochondrial genome identified by nucleotide linguistics. Gene 122, 129-137 (1992)

77. Trifonov, E. N., Recognition of correct reading frame by the ribosome. Biochimie 74, 357-362 (1992)

76. Ioshikhes, I., Bolshoy, A., Trifonov, E. N., Preferred positions of AA and TT dinucleotides in aligned nucleosomal DNA sequences. J. Biomolec. Str. and Dynamics 9, 1111-1117 (1992)

75. Trifonov, E. N., Genetic sequences as a language. Rev. Brasileira de Genetica 15, Suppl. 1, 180-186 (1992)

74. Trifonov, E. N., Informational structure of genetic sequences and nature of gene splicing. In "Advances in Biomolecular Simulations. AIP Conference Proceedings 239" (Eds. R. Lavery, J.-L. Rivail and J. Smith), AIP press, New York, 1991, pp. 329-338

73. Trifonov, E. N., DNA in profile. Trends Biochem. Sc. 16, 467-470 (1991)

72. Beckmann, J. S., Trifonov, E. N., Splice junctions follow a 205-base ladder. Proc. Natl. Acad. Sci. USA 88, 2380-2383 (1991)

71. Bolshoy, A., McNamara, P., Harrington, R. E., Trifonov, E. N., Curved DNA without AA: experimental estimation of all 16 wedge angles. Proc. Natl. Acad. Sci. USA 88, 2312-2316 (1991)

70. Trifonov, E. N., DNA as chromatin organizer. In: "Theoretical Biochemistry and Molecular Biophysics, v. 1: DNA" (Eds. D. L. Beveridge and R. Lavery), Adenine. Press, New York, 1991, pp. 377-388

69. McNamara, P. T., Bolshoy, A., Trifonov, E. N., Harrington, R. E., Sequence-dependent kinks induced in curved DNA. J. Biomolec. Str. and Dynamics 8, 529-538 (1990)

68. Pietrokovski, S., Hirshon, J., Trifonov, E. N., Linguistic measure of taxonomic and functional relatedness of nucleotide sequences. J. Biomolec. Str. and Dynamics 7, 1251-1268 (1990)

67. Trifonov, E. N., Making sense of the human genome. In: "Structure and Methods, vol. 1, Human Genome Initiative and DNA Recombination", (Eds. R. H. Sarma and M. H. Sarma), Adenine Press, New York, 1990, pp. 69-77

66. Trifonov, E. N., The multiple codes of nucleotide sequences. Bull. Math. Biol. 51, 417-432 (1989)

65. Trifonov, E. N., Searching for codes in the sequences. In: "Biomolecular Data: A Resource in Transition", (Ed. R. R. Colwell), Oxford University Press, 1989, pp. 199-210

64. Bucher, P., Trifonov, E. N., CCAAT box revisited - bidirectionality, location and context. J. Biomolec. Str. and Dynamics 5, 1231-1236 (1988)

63. Trifonov, E. N., Nucleotide sequences as a language: morphological classes of words. In: "Classification and Related Methods of Data Analysis", (Ed. H. H. Bock), Elsevier Science Publ. B. V. (North Holland), 1988, pp. 57-64

62. Trifonov, E. N., Codes of nucleotide sequences. Math. Biosci. 90, 507-517 (1988). Also reprinted in: "Nonlinearity in Biology and Medicine", (Eds. A. S. Perelson, B. Goldstein, M. Dembo and J. A. Jacques), Elsevier Science Publ. Co., Inc., 1988, pp. 507-517

61. Trifonov, E. N., Ulanovsky, L. E., Inherently curved DNA and its structural elements. In: "Unusual DNA Structures", (Eds. R. D. Wells and S. C. Harvey), Springer Verlag, New York, 1988, pp. 173-187

60. Trifonov, E. N., Tan, R. K.-Z., Harvey, S. C., Static persistence length of DNA. As below, pp. 243-253

59. Trifonov, E. N., Mengeritsky, G., Bent DNA in chromatin versus free curved DNA. In: "Structure and Expression. Volume 3: DNA Bending and Curvature", (Eds. W. K. Olson, M. H. Sarma, R. H. Sarma and M. Sundaralingam), Adenine Press, 1988, pp 159-167

58. Ulanovsky, L. E., Trifonov, E. N., Estimation of wedge components in curved DNA. Nature 326, 720-722 (1987)

57. Bucher, P., Trifonov, E. N., On Nussinov's compilation of eukaryotic transcription initiation sites. J. Theor. Biol. 126, 373-375 (1987)

56. Trifonov, E. N., Translation framing code and frame-monitoring mechanism as suggested by the analysis of mRNA and 16S rRNA nucleotide sequences. J. Molec. Biol. 194, 643-652 (1987)

55. Bucher, P., Trifonov, E. N., Compilation and analysis of eukaryotic Pol II promoter sequences. Nucl. Acids Res. 14, 10009-10026 (1986)

54. Beckmann, J. S., Brendel, V., Trifonov, E. N., Intervening sequences exhibit distinct vocabulary. J. Biomolec. Str. and Dynamics 4, 391-400 (1986)

53. Brendel, V., Beckmann, J. S., Trifonov, E. N., Linguistics of nucleotide sequences: morphology and comparison of vocabularies. J. Biomolec. Str. and Dynamics 4, 11-21 (1986)

52. Trifonov, E. N., Brendel, V., Gnomic - a dictionary of genetic codes (BOOK). Balaban Publishers, Rehovot-Philadelphia, 1986. Reprint: Verlag Chemie, 1987

51. Ulanovsky, L. E., Trifonov, E. N., A different view point on the chromatin higher order structure: steric exclusion effects. In: "Biomolecular Stereodynamics III", (Eds. R. H. Sarma and M. H. Sarma), Adenine Press, 1986, pp. 35-44

50. Brendel, V., Hamm, G. H., Trifonov, E. N., Terminators of transcription with RNA polymerase from Escherichia coli: what they look like and how to find them. J. Biomolec. Str. and Dynamics 3, 705-723 (1986)

49. Ulanovsky, L., Bodner, M., Trifonov, E. N., Choder, M., Curved DNA: design, synthesis and circularization. Proc. Natl. Acad. Sci. USA 83, 862-866 (1986)

48. Trifonov, E. N., Imperfect complementarity and RNA structure. J. Biosci. 8, Suppl., 781-790 (1985)

47. Trifonov, E. N., Konopka, A. K., Jovin, T. M., Unusual frequencies of certain alternating purine-pyrimidine runs in natural DNA sequences. Relation to Z-DNA. FEBS Let. 185, 197-202 (1985)

46. Trifonov, E. N., Curved DNA. CRC Crit. Rev. Biochemistry 19, 89-106 (1985)

45. Trifonov, E. N., Mengeritsky, G., Simian virus 40 replication pause sites map with the nucleosomes. J. Virol., 52, 1011-1012 (1984)

44. Trifonov, E. N., Construction of an algorithm for locating splicing junctions. As below, pp. 21-26 and 119-124, respectively

43. Brendel, V., Trifonov, E. N., Computer-aided mapping of DNA-protein interaction sites. As below, pp. 17-20 and 115-118, respectively

42. Wartenfeld, R., Mengeritsky, G., Trifonov, E. N., Periodicity in nucleosomal DNA sequences. CODATA Bull., 56, 14-16 (1984); and (reprinted) "The Role of Data in Scientific Progress", (Ed. P. S. Glaeser), North Holland, Amsterdam, 1985, pp. 111-113

41. Brendel, V., Trifonov, E. N., A computer algorithm for testing potential prokaryotic terminators. Nucl. Acids Res. 12, 4411-4427 (1984)

40. Mengeritsky, G., Trifonov, E. N., Nucleotide sequence-directed mapping of the nucleosomes of SV40 chromatin. Cell Biophysics 6, 1-9 (1984)

39. Ulanovsky, L. E., Trifonov, E. N., Superhelicity of nucleosomal DNA changes its double-helical repeat. Cell Biophysics 5, 281-283 (1983)

38. Trifonov, E. N., Bolshoi, G., Open and closed 5S rRNA - the only two universal structures encoded in the nucleotide sequences. J. Molec. Biol. 169, 1-13 (1983)   

37. Mengeritsky, G., Trifonov, E. N., Nucleotide sequence-directed mapping of the nucleosomes. Nucl. Acids Res. 11, 3833-3851 (1983)

36. Trifonov, E. N., Nucleosomal DNA structure. In: "Nucleic Acids: the vectors of life" (Eds. B. Pullman and J. Jortner), D. Reidel Publ. Company, Dordrecht-Boston-Lancaster, 1983, pp. 373-385

35. Trifonov, E. N., Sequence-dependent variations of B-DNA structure and protein-DNA recognition. Cold Spring Harbor Symp. Quant. Biol. 47, 271-278 (1983)

34. Kabsch, W., Sander, C., Trifonov, E. N., The ten helical twist angles of B-DNA. Nucl. Acids Res. 10, 1097-1104 (1982)

33. Trifonov, E. N., Structure of DNA in chromatin. In: "International Cell Biology 1980-1981" (Ed. H. Schweiger), Springer-Verlag, Berlin, 1981, pp. 128-138

32. Trifonov, E. N., Topological paradox of minichromosomes? As below, pp. 711-720

31. Trifonov, E. N., Deformational anisotropy of DNA molecule. In: "Structural Aspects of Recognition and Assembly in Biological Macromolecules", (Eds. M. Balaban, J. Sussman, W. Traub and A. Yonath), Balaban ISS, Rehovot-Philadelphia, 1981, pp. 525-536

30. Trifonov, E. N., Sequence-dependent deformational anisotropy of chromatin DNA. Nucl. Acids Res. 8, 4041-4053 (1980)

29. Trifonov, E. N., Sussman, J. L., The pitch of chromatin DNA is reflected in its nucleotide sequence. Proc. Natl. Acad. Sci. USA 77, 3816-3820 (1980)

28. Nussinov, R., Sussman, J. L., Trifonov, E. N., MS2 RNA has a potential to form an unusually large number of stable hairpins. J. Theor. Biol. 85, 481-486 (1980)

27. Trifonov, E. N., Bettecken, T., On the orientational nature of sensitivity of nucleosomal DNA to nuclease digestion. As below, pp. 233-234

26. Trifonov, E. N., Sussman, J. L., Smooth bending of DNA in chromatin. In: "Molecular Mechanisms of Biological Recognition" (Ed. M. Balaban), Elsevier/North Holland Biomed. Press, 1979, pp. 227-232

25. Trifonov, E. N., Bettecken, T., Noninteger pitch and nuclease sensitivity of chromatin DNA. Biochemistry 18, 454-456 (1979)

24. Trifonov, E. N., The helical model of the nucleosome core. Nucl. Acids Res. 5, 1371-1380 (1978)

23. Sussman, J. L., Trifonov, E. N., Possibility of non-kinked packing of DNA in chromatin. Proc. Natl. Acad. Sci. USA 75, 103-107 (1978)

22. Trifonov, E. N., Lyubchenko, Y. L., An electron microscopic study of low-melting sites in bacteriophage T7. In: "Conformational Changes of Biopolymers in Solutions", Tbilisi 1975, pp. 71-78 (Russian)

21. Sukhoviya, M. I., Koval'chuk, A. V., Trifonov, E. N., Effect of ionizing electromagnetic radiation on DNA in solution and on white blood cells. Doklady Biophysics 225, 191-194 (1975)

20. Komolova, G. S., Trifonov, E. N., Egorov, I. A., Damage to DNA structure in tissues of gamma-irradiated animals. Doklady Biochemistry 208, 7-9 (1973)

19. Lyubchenko, Y. L., Trifonov, E. N., Baev, A. S., Lazurkin, Y. S., Frank- Kamenetskii, M. D., A study of early stages of thermal denaturation of T2 DNA. In: "Conformational Changes of Biopolymers in Solutions", Nauka, Moscow, 1973, pp. 15-22 (Russian)

18. Shafranovskaya, N. N., Trifonov, E. N., Lazurkin, Y. S., Frank-Kamenetskii, M. D., Clustering of thymine dimers in ultraviolet irradiated DNA and the long-range transfer of electronic excitation along the molecule. Nature New Biology 241, 58-60 (1973)

17. Komolova, G. S., Trifonov, E. N., Egorov, I. A., Investigation of DNA subjected to gamma irradiation in vitro by a kinetic formaldehyde method. Doklady Biochemistry 207, 443-445 (1972)

16. Spirin, A. S., Bogatyreva, S. A., Trifonov, E. N., Dependence of Poly-U directed cell-free system on ratios of divalent and monovalent cations. In: "Molecular Evolution, Prebiological and Biological", eds D. Rohlfing and A. Oparin, Plenum Press, NY, 1972, pp. 291-296 (same as No. 10)

15. Baev, A. S., Lyubchenko, Y. L., Lazurkin, Y. S., Trifonov, E. N., Frank-Kamenetskii, M. D., Study of low-melting segments in T2 phage DNA by electron microscopy and the kinetic formaldehyde method. Molecular Biology 6, 612-617 (1972)

14. Shafranovskaya, N. N., Trifonov, E. N., Lazurkin, Y. S., Frank-Kamenetskii, M. D., Long range migration of electron excitation energy through a DNA molecule. JETP Letters 15, 285-287 (1972)

13. Lyubchenko, Y. L., Trifonov, E. N., Lazurkin, Y. S., Frank-Kamenetskii, M. D., Detection of low-melting sites in the phage T2 DNA molecule. Molecular Biology 5, 618-623 (1971)

12. Trifonov, E. N., Kinetics of unwinding of DNA under action of formaldehyde. Ph. D. thesis, Moscow Physico-Technical Institute, 1970 (Russian)

11. Lazurkin, Y. S., Frank-Kamenetskii, M. D., Trifonov, E. N., Melting of DNA: its study and application as a research method. Biopolymers 9, 1253-1307 (1970)

10. Bogatyreva, S. A., Trifonov, E. N., Spirin, A. S., Dependence of poly-U directed cell-free system on ratios of divalent and monovalent cations. Doklady Biochemistry 195, 315-318 (1970)

 9. Bannikov, Y. A., Trifonov, E. N., Investigation of defects in the secondary structure of DNA with single-strand breaks. Molecular Biology 4, 597-603 (1970)

 8. Berestetskaya, I. V., Kosaganov, Y. N., Lazurkin, Y. S., Trifonov, E. N., Frank-Kamenetskii, M. D., Melting of DNA with secondary structure defects. Molecular Biology 4, 106-110 (1970)

 7. Berestetskaya, I. V., Kosaganov, Y. N., Lazurkin, Y. S., Trifonov, E. N., Frank-Kamenetskii, M. D., Melting of DNA with defects in its secondary structure (thermodynamic method for determination of concentration of defects). As below, pp. 355-370

 6. Bannikov, Y. A., Trifonov, E. N., Application of the formaldehyde kinetic method to DNA with single strand breaks. As below, pp. 323-336

 5. Trifonov, E. N., Frank-Kamenetskii, M. D., Lazurkin, Y. S., The formaldehyde kinetic method: its physical basis and applications to investigation of DNA structure. In: "Structure and Genetical Functions of Biopolymers", Second Conference of Department of Radiobiology of Kurchatov Institute of Atomic Energy, Moscow, 1969, pp. 305-322 (Russian, abstr. English)

 4. Trifonov, E. N., Shafranovskaya, N. N., Frank-Kamenetskii, M. D., Lazurkin, Y. S., Kinetic method for determining the concentration of defects of the secondary structure of DNA. Molecular Biology 2, 698-705 (1968)

 3. Trifonov, E. N., Lazurkin, Y. S., Frank-Kamenetskii, M. D., Formaldehyde-induced uncoiling of DNA. Molecular Biology 1, 142-151 (1967)

 2. Kosaganov, Y. N., Trifonov, E. N., Hydrodynamical methods. In: "Physical Methods of Investigation of Proteins and Nucleic Acids", Nauka, Moscow, 1967, pp. 222-288 (Russian)

 1. Trifonov, E. N., Lazurkin, Y. S., Frank-Kamenetskii, M. D., Kinetics of denaturation of DNA under action of formaldehyde. In: "Structure, Properties and Genetic Function of DNA",.Conference of Department of Radiobiology of the Kurchatov Institute of Atomic Energy, Moscow, 1966, pp. 83-110. (Russian, abstr. English)