Genome Diversity Center

at the Institute of Evolution, University of Haifa

(Since August 2000)
Head: Edward N. Trifonov



List of latest publications:


Kogan, S., Trifonov, E. N., Gene splice sites correlate with nucleosome positions, Gene 352, 57-62 (2005)

Cohanim, A. B., Kashi, Y., Trifonov, E. N., Yeast nucleosome DNA pattern: deconvolution from genome sequences of S. cerevisiae. J Biomol Str Dyn 22, 687-694 (2005)

Frenkel Z., Trifonov, E. N., Closed loops of TIM barrel protein fold, J Biomol Str Dyn 22, 643-656 (2005)

Trifonov, E. N. Theory of early molecular evolution: Predictions and confirmations. In: Discovering Biomolecular Mechanisms with Computational Biology (Ed. F. Eisenhaber), Landes Bioscience, Georgetown, pp (2005)

Aharonovsky, E., Trifonov, E. N. Sequence structure of van der Waals locks in proteins. J Biomol Str Dyn 22, 545-554 (2005)

Peleg, O., Kirzhner, V. M., Trifonov, E. N., Bolshoy, A., Overlapping messages and survivability. J. Molec. Evol. 59, 520-527 (2004).

Hosid, S., Trifonov, E. N., Bolshoy, A., Sequence periodicity of Escherichia coli genome is concentrated in intergenic regions. BMC Molecular Biology 5:14 (2004).
http://www.biomedcentral.com/bmcmolbiol/

Trifonov, E. N. The triplet code from first principles. J Biomolec Str Dyn 22, 1-11 (2004)

Trifonov, E. N., The tuning function of the tandemly repeating sequences: molecular device for fast adaptation. In: Evolutionary Theory and Processes: Modern Horizons, Wasser, S. P. (Ed.), Kluwer Academic Publishers, pp 115-138 (2004)

Berezovsky I. N., Trifonov, E. N., Protein structure: marriage with polymer physics, In "Protein structures. Kaleidoscope of Structural Properties and Functions", v. 1, Uversky V. N., Editor, Transworld Research Network, Trivandrum, India, pp 1-15 (2003)

Bellgard, M., Gamble, T., Reynolds, M., Hunter, A., Trifonov, E., Taplin, R., Gap Mapping: A paradigm for aligning two sequences. Applied Bioinformatics 2, Suppl. 3, 1-5 (2003)

Peleg, O., Trifonov, E. N., Bolshoy, A., Hidden messages in the nef gene of human immunodeficiency virus Type 1 suggest a novel RNA secondary structure. Nucl. Acids Res. 31, 4192-4200 (2003)

Berezovsky, I. N., Kirzhner, A., Kirzhner, V. M., Trifonov, E. N., Spelling protein structure, J. Biomol. Struct. Dyn. 21, 327-339 (2003)

Berezovsky, I. N., Kirzhner, V. M., Kirzhner, A., Rosenfeld, V. R., Trifonov, E. N., Protein sequences yield a proteomic code, J. Biomol. Struct. Dyn. 21, 317-325 (2003)

Kato, M., Onishi, Y.,Wada-Kiyama, Y., Abe, T., Ikemura, T., Kogan, S., Bolshoy, A., Trifonov, E. N., Kiyama R., Dinucleosome DNA of human K562 cells: experimental and computational characterizations. J. Molec. Biol. 332, 111-125 (2003)